Stars
Graph Neural Network Library for PyTorch
Quickly rewrite git repository history (filter-branch replacement)
High accuracy RAG for answering questions from scientific documents with citations
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Make images look as if they are made out of 1x1 LEGO blocks
Handout for the tutorial "Creating publication-quality figures with matplotlib"
A curated list of awesome deep learning applications in the field of computational biology
List of papers about Proteins Design using Deep Learning
Listing of papers about machine learning for proteins.
Implementation of Alphafold 3 from Google Deepmind in Pytorch
A collaboratively written review paper on deep learning, genomics, and precision medicine
List of software packages for multi-omics analysis
A console script that allows you to easily update multiple git repositories at once
Recipe for a General, Powerful, Scalable Graph Transformer
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
Python utilities for Manubot: Manuscripts, open and automated
Examples of using deep learning in Bioinformatics
A walkthrough of transformer architecture code