Stars
napari: a fast, interactive, multi-dimensional image viewer for python
aqt: Another (unofficial) Qt CLI Installer on multi-platforms
A Python package to visualise neuroanatomical data in atlas space
Automated 3D cell detection in very large images
A Python toolbox for analysing animal body movements across space and time
A Python interface to access neuroanatomical atlases
Automated 3D brain registration with support for multiple species and atlases.
Load 3D meshes from neuroanatomy atlases into Blender via brainglobe API
Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration
Python package template for new research software projects
Rendering anatomical heatmaps with brainrender and matplotlib
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
Segmentation of anatomical structures in a common coordinate space
Utility to create a basic Python project structure with tests, CI etc.
Tool for the creation, validation and transfer of neuroscience project folders.
Registration to BrainGlobe atlases in napari using Elastix
A package to manage electrophysiology analysis.
A napari plugin to render BrainGlobe atlases and associated data as layers.
Efficient cell detection in large images using cellfinder in napari
Mix-and-match computer vision tools for your animal behaviour analysis
Standalone cellfinder cell detection algorithm
A Python package to download neuronal morphologies
Automated 3D brain registration in napari with support for multiple species and atlases.
Read and write files from the BrainGlobe neuroanatomy suite
A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.
Templates for commonly used GitHub actions steps
Code for recreating the figures in the brainrender paper (Claudi et al. 2020)
Tools for packaging atlases for use with BrainGlobe
A GUI built on brainrender: visualise brain regions, neurons and labelled cells.