Python package providing mesoscale connectivity models for mouse.

fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

Machine learning for NeuroImaging in Python

Collecting papers from PubMed Central and extracting text, metadata and stereotactic coordinates.

CortPro: Your cortical profiling toolbox

Useful tools from the Network Neuroscience Lab

Comet: Multiverse analysis for neuroimaging

GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractog…

Post-processing of fMRIPrep, NiBabies, and HCP outputs

The Web framework for perfectionists with deadlines.

A toolbox for comparing brain maps

NSGA2, NSGA3, R-NSGA3, MOEAD, Genetic Algorithms (GA), Differential Evolution (DE), CMAES, PSO

A toolbox for generating spatial null maps using geometric eigenmodes

Chat with GitHub Copilot in Neovim

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Samples for CUDA Developers which demonstrates features in CUDA Toolkit

Standalone Activation Likelihood Estimation package based on Python

A C implementation of TVB's simulation core. It implements a brain network model composed of ReducedWongWang neural masses with feedback inhibition control (Schirner et al. 2018, Deco et al. 2014)

cross-species alignment (joint-embedding between human and macaque)

A package for publication-ready brain surface figures

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

Tools for mesh surface-based operations

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…

A statistics and context decoding toolbox for neuroimaging.

Open-source demos hosted on Dash Gallery

fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in s…

A beautiful, simple, clean, and responsive Jekyll theme for academics