Stars
A modular pipeline for the discovery of TCR metaclones
Source code accompanying the paper 'Limits on inferring T cell specificity from partial information'
Chai-1, SOTA model for biomolecular structure prediction
Code and data used in The Great Repertoire Project
A set of functions built into an R package for examining HLA diversity
A comprehensive library for computational molecular biology
bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"
NoisET is an easy-to-use python package that implements and generalizes a previously developed Bayesian method in [Puelma Touzel et al, 2020] ). It can be used to learn experimental noise models fo…
Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"
A project to extract CRISPR information from open genetic data.
Jekyll Jupyter Notebook plugin
arXiv LaTeX Cleaner: Easily clean the LaTeX code of your paper to submit to arXiv
PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.
Compute generation probabilities of CDR3 amino acid and nucleotide sequences
PUBLIC is a set of Python scripts for analyzing sharing of TCRs, and predict public clones
Agent-based simulation of the humoral immune response to vaccination.
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
Solve symbolically defined systems of non-linear equations numerically.