Research Scientist | Bioinformatician Using multi-omics to investigate immunology, cancer and disease across development and clinical datasets
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scH5Loader
scH5Loader PublicscH5Loader: Python package to use h5py to explore single cell data from .h5ad file to load into memory only desired cells and metadata into an anndata format saving on total memory consumption
Jupyter Notebook 2
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Pseudo-spatial_visualisation_of_scRNAseq_data
Pseudo-spatial_visualisation_of_scRNAseq_data PublicPython code and pipelines for visualising pseudo-spatial metadata using masks for single cell data. Nicknamed ELMER visualisation
Jupyter Notebook 1
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FCA_yolkSac
FCA_yolkSac PublicForked from haniffalab/FCA_yolkSac
Repository containing all code for HCA yolk sac analysis
Jupyter Notebook
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