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Oregon Health & Science University
- Portland, OR
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08:35
(UTC -07:00) - http://benjaminbarad.com
- https://orcid.org/0000-0002-1016-862X
- @benjaminbarad
- https://bsky.app/profile/tomo.science
Highlights
- Pro
Stars
Colorblind-friendly, perceptually uniform palettes for chimerax
Atomic model based landscape analysis for cryo-EM
learns to improve tilt-series alignment by making it worse
Generates synthetic datasets for Cryo-Electron Tomography
Two-Dimensional Template Matching implemented in Python
GPU-accelerated template matching for cryo-ET
A possible schema for cryoET geometry metadata
Python codes related to the analysis of co-translating ribosomes on outer mitochondrial membrane
Particle annotations for the large-scale cryo-ET dataset of Chlamydomonas reinhardtii
GUI for Surface Morphometrics Pipeline
Calculate the Fourier shell correlation in PyTorch
Paraview Plugin for extracting mid-surfaces from binary segmentation masks.
a tool for using surfaces to explore volumetric data in napari
A tool to support interactive machine learning for cryoET data
Smart Parallel Automated Cryo Electron tomography
A curated list of projects related to the reMarkable tablet
TS2CG: Conversion of triangulated surfaces to (coarse grain) membrane models for molecular simulation