MAximum Parsimonious Likelihood Estimation in C/C++

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

Code for nCov forecasting tool (Shiny app)

Global phylogenies of SARS-CoV-2 sequences

A phylogeny dating method using least-squares algorithms and criteria

iqtreeGUI - A graphical user interface for IQ-TREE

Developing a statistic to test tree likeness and identify genes that don't fit the model.

Benchmark empirical datasets for phylogenetic method development

MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

Modelomatic - A software for model selection across state-spaces

CIBIV website

WebGL protein viewer

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

Efficient phylogenomic software by maximum likelihood

Implementation of a polymorphism aware phylogenetic model using HYPHY

Bayesian Evolutionary Analysis by Sampling Trees

A Jekyll port of the Solid theme (by blacktie.co).