This repository hosts the example notebooks that are included as a companion to the paper Kumar et al. (2020) BrainIAK: Brain Imaging and Analysis Kit. Instructions for running each analysis (including links to the relevant datasets and setup instructions) are included as part of each notebook.

The following notebooks are included in the repository (section numbers from the paper are noted in parentheses):

1. Intersubject Correlation (ISC; Section 2.1)
2. Shared Response Model (SRM; Section 2.2)
3. Full Correlation Matrix Analysis (FCMA; Section 2.3)
4. Bayesian Representational Similarity Analysis (BRSA; Section 2.4)
5. Event Segmentation (Section 2.5)
6. Topographic Factor Analysis (TFA; Section 2.6)
7. Inverted Encoding Model (IEM; Section 2.7)
8. Simulating Realistic fMRI Data (fmrisim; Section 2.8)
9. Matrix-Normal Models (Section 2.9.2)
10. Real-Time fMRI Analysis (Section 3)