Leveraging BERT and c-TF-IDF to create easily interpretable topics.

This reposotory is used to document the work of the NFDI Section (Meta)Data Working Group on Ontology Harmonization and Mapping.

A formatter for reStructuredText

Organisation of the ENERO Foundry

for issuing unique IDs for document control

A domain-agnostic extension of the DCAT Application Profile. It allow providing domain-specific metadata for the processes and agents involved in the creation of a dataset as well as for the entiti…

Central repository for PhyloPic

Create and run uv scripts with POSIX standardized shebang line

NFDI Core Ontology

⚡ Better `pre-commit`, re-engineered in Rust

The Terminology Service Suite project is a collection of interactive widgets designed to ease the integration of terminology service functions into third-party applications.

Demo UI: https://ts4nfdi.github.io/api-gateway

The TS4NFDI Service Portal.

Service Portal deployment configuration

This is an extension of the DCAT Application Profile PLUS LinkML schema. It is intended to be used by NFDI4Chem & NFDI4Cat as a core that can further be extended in profiles/schemas to provide chem…

MiTO, the Mention Typing Ontology, is an ontology written in OWL 2 DL. Its aim is to enable the formalization of the concept of mentions.

The Intrinsically Disordered Proteins Ontology, a standardized vocabulary for intrinsically disordered proteins

Generalist and Lightweight Model for Named Entity Recognition (Extract any entity types from texts) @ NAACL 2024

CDE Mapper is an automated concept linking tool to find appropriate standardized terms in OMOP Athena vocabularies for clinical terms in data dictionary. The mapping tool is built with advanced Ret…

A full spaCy pipeline and models for scientific/biomedical documents.

Non-Metric Space Library (NMSLIB): An efficient similarity search library and a toolkit for evaluation of k-NN methods for generic non-metric spaces.

Elevated - The Project

Fair-code workflow automation platform with native AI capabilities. Combine visual building with custom code, self-host or cloud, 400+ integrations.

Core utilities for Python packages

An extremely fast Python type checker and language server, written in Rust.

Static memory-efficient Trie-like structures for Python based on marisa-trie C++ library.

The PRIDE ontology

Development at the speed of light

Taxonomic rank ontology