Tool to generate dot plot from BLAST nuleotide output
Requirements:
- BLAST+ (tested v2.6.0+)
- Python (tested v3.6.7)
Usage:
dotBlast.py <reference_file> <queries_file> <eval>
reference_file: FASTA file with reference sequence
queries_file: FASTA file with query sequences
eval: Maximum E-value to consider in BLAST alignment
Output:
queries_vs_ref.txt
Each line represents the x or y component of each alignment in the queries file order.
<query_1_x>
<query_1_y>
<query_2_x>
<query_2_y>
...