Starred repositories
MELD classifier using Geometric Deep Learning
Neural network classifier for MELD
ggseg3d R package for visualising brain atlases through plotly
Run OpenClaw more securely inside NVIDIA OpenShell with managed inference
Fusion framework for management of functional imaging datasets
Data and code supporting Hansen et al., 2024, Nature Neuroscience "Integrating brainstem and cortical functional architectures"
A pythonic 3D viewer to visualize and plot brains and neuroimaging data
Code for processing DTI data and performing tractography analyses
codes for paper accepted in IPMI2025 titled: ''MAD-AD: Masked Diffusion Autoencoder for Unsupervised Brain Anomaly Detection"
Large-scale semi-supervised framework with 1B+ labeled masks from 48K+ datasets with test-time adaptation to new domains (ICCV25).
[MICCAI, 2024] (Oral, RU @ MedIA Best Paper Award) Official implementation of the Brain Latent Progression (BrLP) method from "Enhancing Spatiotemporal Disease Progression Models via Latent Diffusi…
The repository provides code for running inference and finetuning with the Meta Segment Anything Model 3 (SAM 3), links for downloading the trained model checkpoints, and example notebooks that sho…
Finetune SAM3 with LoRA — optimized for images. A simple setup for training SAM3 on image datasets. Video finetuning is not yet supported but planned for future releases.
MedSAM3: Delving into Segment Anything with Medical Concepts
PaperBanana: Automating Academic Illustration For AI Scientists
Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
SPM (Statistical Parametric Mapping) - Development Version
Unsupervised Deep Learning for Model-Free Blood‒Brain Barrier Leakage Detection with Dynamic Contrast-Enhanced MRI in Diffuse Gliomas
connect notebookLM to mcp server antigravity, opencode
Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞
Installable GitHub library of 1,340+ agentic skills for Claude Code, Cursor, Codex CLI, Gemini CLI, Antigravity, and more. Includes installer CLI, bundles, workflows, and official/community skill c…
Auto AIF detection for ROCKETSHIP
Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)