CV/resume generator for academics and engineers, YAML to PDF

The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.

Reads key-value pairs from a .env file and can set them as environment variables. It helps in developing applications following the 12-factor principles.

A multi-agent LLM system for drug-target interaction (DTI) prediction

A cytoscape.js plugin supporting the layout of SBGN diagrams

Supports papers on the development and evaluation of analyst and reviewer agents. Generate and evaluate mechanistic hypotheses derived from datasets.

SketchLay: User-Guided Force-Directed Graph Layout through Freehand Sketching

A Python package and command-line interface for extracting knowledge graphs from text, with a special focus on supporting agents working with scientific hypotheses and experiment design

Goxel: Free and Open Source 3D Voxel Editor

An open-source fighting game engine that supports MUGEN resources.

Space-themed 🚀 Soko-Ban 🎮 clone created in Python using Pyxel.

A python module to repair invalid JSON from LLMs

An unofficial api for downloading papers from SciHub via DOI, PMID, title

NewsMap JS - JS implementation of the defunct newsmap.jp

a cheat-sheet for mathematical notation in code form

OCR powered screen-capture tool to capture information instead of images

Chrome extension to expand a prefix snippet into an expanded form.

CSS with few but great styles for basic HTML5 tags

NeRF (Neural Radiance Fields) and NeRF in the Wild using pytorch-lightning

scPerturb: A resource and a python/R tool for single-cell perturbation data

A latent text-to-image diffusion model

Stable diffusion google colab kernel

TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.

Tutorial on inferring gene regulatory networks from single-cell data

R Markdown Format for reveal.js Presentations

webhook is a lightweight incoming webhook server to run shell commands

A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.

Hugo Multi BootSwatch Theme is a single column theme for [hugo](http://hugo.spf13.com/) based on [Twitter Bootstrap](http://getbootstrap.com/) and a css styling from [Bootswatch](http://bootswatch.…

zeptosensPkg contained the Target Score package developed by Anil Korkut group.