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kakapo_aspergillosis Public
Working directory for analysis of kākāpō _Aspergillus_ isolates
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hyliter Public
R package to connect HyLiTE output to the DeSeq2 differential gene expression software
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bedtools2 Public
Forked from arq5x/bedtools2bedtools - the swiss army knife for genome arithmetic
C MIT License UpdatedJun 9, 2021 -
LoReAn Public
Forked from lfaino/LoReAnLong Reads Annotation pipeline
Python MIT License UpdatedJun 8, 2021 -
Paga_annotation Public
Analyses associated with the annotation of the P. agathidicida genome
Python UpdatedMay 27, 2021 -
pafr Public
Read, manipulate and visualize 'Pairwise mApping Format' data in R
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pafr-demo Public
A repository with code to demonstrate complete analyses using pafr and minimap2
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ToTidy Public
Code to produce trees and heatmaps for B-tub and all species to be iterable
R UpdatedDec 12, 2019 -
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gene2product Public
Forked from nextgenusfs/gene2productCurated list of gene names and product descriptions that pass NCBI genome submission rules.
Python BSD 2-Clause "Simplified" License UpdatedJul 30, 2019 -
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wrangling-genomics Public
Forked from datacarpentry/wrangling-genomicsHTML Other UpdatedMar 5, 2019 -
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mollusc_worshop_example Public
Working directory to demonstratea exploratory analyses on a GBS dataset
R MIT License UpdatedDec 5, 2018 -
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so-simple-theme Public
Forked from mmistakes/so-simple-themeA simple Jekyll theme for words and pictures.
CSS Other UpdatedJul 26, 2018 -
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ngmlr Public
Forked from philres/ngmlrNGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
C++ MIT License UpdatedJun 27, 2018 -
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fl1_genome_scripts Public
Scripts and analysis utils to support a manuscript describing the Fl1 genome
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