This project is part of the Bioinformatics course at the Faculty of Electrical Engineering and Computing, University of Zagreb.
In order to compile the project, clone the repository and position yourself in the C++ folder. Then simply run the make command, which should create mutation_finder.
The program expect 2 arguments:
- path to fasta file containing the referent genome
- path to fasta file containing reads of genome sequences
The program will create a file names result.csv that contains all the mutations found in the referent genome.
An example of input files is given in the data folder.