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Commits on May 9, 2019

• Added output argument

  Shians

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• Added documentation

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• Changed dump_per_read_statistic.py to be executable

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Commits on May 8, 2019

• Added script to dump per-read statistics to text file. Fixes #174.

  marcus1487

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Commits on Oct 12, 2018

• Version 1.5 release. This release includes two major feature additions. The first is motif-specific model (packaged with CpG, dam and dcm models) which provide more accurate detection of modificati…

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Commits on Aug 1, 2018

• Version 1.4 release. This release includes major improvements to RNA signal processing (via resquiggle command), a major re-write of the Tombo python API, and use of the canonical model as a prior …

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Commits on May 23, 2018

• Version 1.3 release. This release includes updates to signal normalization procedure (including sequence-dependent iterative re-scaling) and an outlier-robust alternative model comparison method. T…

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Commits on Mar 12, 2018

• Version 1.2.1 release. This release extends the use of dampened-fraction to all commands that take a statistics file. This release adds additional features for analyzing per-read statistics. This r…

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Commits on Feb 27, 2018

• Fixes a minor issue when control and sample reads map to a different set of fasta records (more prevelant in transcriptome mappings). Related to issue #33. Also removed old roc_curve scripts that w…

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Commits on Feb 13, 2018

• Major tombo update. Added 6mA alternative model, improved re-squiggle via parameter tuning, per-read statistics output including random genomic access API, cleaner UX (python3 compatible, mappy/min…

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Commits on Dec 15, 2017

• Minor version upgrade to Tombo to version 1.1. This update includes major changes to the alternative base model estimation as well as a new default 5mC model trained with this new method. Also adde…

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Commits on Nov 29, 2017

• First public version of tombo.

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