Precision HLA typing from next-generation sequencing data

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

A one stop repository for generative AI research updates, interview resources, notebooks and much more!

A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker

Spatial Single-Cell Analysis Toolkit

A repository for explaining feature attributions and feature interactions in deep neural networks.

Scripts to manipulate genetic data

utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.

Convert genetic variants to minimal representation

web-based analysis tool for rare disease genomics

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

Official code repository for GATK versions 4 and up

Cloud-native genomic dataframes and batch computing

freeCodeCamp.org's open-source codebase and curriculum. Learn math, programming, and computer science for free.