Tools to simulate multi-echo fMRI time series

An offline-first scientific writing workspace powered by Claude. LaTeX + Python + 100+ scientific skills all running locally.

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

[Neural Networks 2025] EEGMamba: An EEG Foundation Model with Mamba

DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning

The PyTorch implementation of STGCN.

Graph Neural Network Library for PyTorch

panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps

A client for accessing OpenNeuro datasets, written in Python.

My public talks

Open multi-echo datasets

A BIDS App for the tedana workflow

Sample code for Tana Input API

Deep Learning Course instructed by Yann LeCun and Alfredo Canziani

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Packages for creating MyST websites themes using React and Remix

A cookiecutter template to go along with Contemporary Python Packaging gists

Source code for the X Recommendation Algorithm

Fast and modular sklearn replacement for generalized linear models

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

A small python package to access publicly available brain atlases in a BIDS-Atlas compliant manner.

An opinionated collection of components, hooks, and utilities for your Next.js project.

The LaTeX thesis template provided by the University of Minnesota, with various improvements.

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

Still a work in progress.

NiGSP: a module for graph signal processing on neuroimaging data

A Beamerposter template with the BCBL logo and colors. It is forked from Gemini via gemina-uq.

Python package to access a cacophony of neuro-imaging file formats