Linux kernel source tree

A code-searching tool similar to ack, but faster.

Extremely fast non-cryptographic hash algorithm

Slurm: A Highly Scalable Workload Manager

A versatile pairwise aligner for genomic and spliced nucleotide sequences

SRA Tools

De novo assembler for single molecule sequencing reads using repeat graphs

A flexible framework for rapid genome analysis and interpretation

Pairwise whole genome aligner

A tool set for short variant discovery in genetic sequence data.

Evaluating genome assemblies

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

Library for Reading Bioinformatic Sequence Data in C