Extremely fast non-cryptographic hash algorithm

The CSV magician

Tools for fiberseq data written in rust.

pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

Evaluating genome assemblies

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

Pairwise whole genome aligner

Assembled Genomes Compressor

A list of software for pangenomics

Mumemto: multi-MUM and MEM finding across pangenomes

The complete sequence of a human genome

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

Graph-based alignment (Hierarchical Graph FM index)

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

Tools for fast and flexible genome assembly scaffolding and improvement

Structural variation caller using third generation sequencing

cDNA read preprocessing

Circular visualization in R

A tool set for short variant discovery in genetic sequence data.

Complex structural variant detection from WGS data

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

ENCODE whole-genome bisulfite sequencing (WGBS) pipeline

Specification for the Workflow Description Language (WDL).

Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)

ENCODE long read RNA-seq pipeline

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more