Stars
AgensFlow is an open-source framework that treats multi-agent coordination as an online policy-learning problem under partial observability, enabling learned routing to improve coordination-heavy w…
Pandedup uses minimizers to build a quick & dirty k-mer spectrum (SPSS) from a .AGC pangenome.
Quickly rewrite git repository history (filter-branch replacement)
geNomad: Identification of mobile genetic elements
tiny command-line midi sequencer and language for live coding music
Measures whether a language model's internal state predict properties of its own output
Run frontier MoE models on hardware you already own — pure C, zero deps, experts streamed from disk. Tiny engine, immense model. 🐦
KaryoScope: rapid, alignment-free sequence annotation for the pangenome era
A framework for rigorous, systematic analysis of claims, sources, predictions, and argument chains.
DeepSpec: a full-stack codebase for training and evaluating speculative decoding algorithms
Modern ggplot2 visualizations for GWAS summary statistics
A WYSIWYG editor for TikZ that parses TikZ code
AI agent toolkit: unified LLM API, agent loop, TUI, coding agent CLI
Pipeline-parallel LLM inference across GPUs on separate machines.
An E-Ink PDA device using the ESP32 S3.
A k-mer search engine for all Sequence Read Archive public accessions
🔗Genome assembly scaffolder using minimizer graphs
EMBO Practical Pangenomics Course 2026
Flexible Genotyping of Polyploids using Next Generation Sequencing Data
The Agentic IDE (or, the loving child of tmux and claude code)
AssetOpsBench - Industry 4.0: A unified benchmark and framework for building, orchestrating, and evaluating domain-specific AI agents for Industry 4.0 asset operations and maintenance, with 460+ sc…
This repository contains two interlinked .NET libraries for working with uncertainty, multistate computation, and time-looped logic in elegant, brain-melting ways.
Scalable inference of gene regulatory networks using Apache Spark and XGBoost