Stars
Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documen…
Collection of library stubs for Python, with static types
Examples of programs built using Modal
A TUI for monitoring Snakemake workflows in real-time.
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
🧬 🌲 Pangenome phylogenetic placement + read alignment + genotyping + metagenomics
RNA-seq workflow using STAR and DESeq2
This is the official codebase for methylGPT : a foundation model for the DNA methylome.
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 170,000+ scientists worldwide. 154 ready-to-use skills plus 100+ scientific databases covering biology, chem…
AI Agent Framework, the Pydantic way
Biomni: a general-purpose biomedical AI agent
This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one o…
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
🪢 Open source AI engineering platform: LLM evals, observability, metrics, prompt management, playground, datasets. Integrates with OpenTelemetry, LangChain, OpenAI SDK, LiteLLM, and more. 🍊YC W23
a small, expressive orm -- supports postgresql, mysql, sqlite, now with asyncio
A utility-first CSS framework for rapid UI development.
🚴 Call stack profiler for Python. Shows you why your code is slow!
An open source multi-tool for exploring and publishing data
🏃🏃 Your next-gen single-cell Foundation Model
Scripts & notebooks for reproducing the analysis from Schmidt et al. (2022). T cells. scRNA-seq + IFNG readouts. Cell Ranger + Scanpy processing. GWS with CRISPR.
Analyze GitHub contributions across an organization.
An JWT based API for managing users and issuing JWT tokens.