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ovaHRDscar
ovaHRDscar PublicR package to quantify allelic imbalances associated with homologous recombination deficiency in ovarian cancer. Use as input a list of segments per samples as those generated by ASCAT.
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- GeoFibroMax Public
- SCSO_Spatial_proteomics_workshop Public
Hands-on workshop materials for analysing the spatial architecture of the tumour microenvironment using multiplexed tissue imaging data and Python-based tools (SCIMAP, UTAG) compiled as Jupyter Book on Github Page.
- Auria_project Public
- devNKI-scripts Public
- Nagaraj-et-al Public
Contains code for the spatial analysis of Fig 5 in publication "Ex Vivo Immuno-Oncology Platform Reveals Spatial T Cell Infiltration Patterns Linked to ATR Inhibition Responses in High-Grade Serous Ovarian Cancer"
- SNParray_ovaHRDscar_QC Public
Script for calculating ovaHRDscar from LogRatio files and BAF files produced with GenomeStudio
- CEFIIRA Public
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