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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMar 12, 2026 -
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wotplot Public
Small Python library for creating and visualizing dot plot matrices
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pyfastg Public
A minimal Python library for parsing FASTG files
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networkx Public
Forked from networkx/networkxNetwork Analysis in Python
Python Other UpdatedJan 7, 2026 -
MetagenomeScope-1 Public
Forked from marbl/MetagenomeScopeWeb visualization tool for (meta)genome assembly graphs
JavaScript GNU General Public License v3.0 UpdatedNov 12, 2025 -
empress Public
Forked from biocore/empressA very fast and scalable phylogenetic visualization viewer
JavaScript BSD 3-Clause "New" or "Revised" License UpdatedMay 1, 2025 -
anvio Public
Forked from merenlab/anvioAn analysis and visualization platform for 'omics data
Python GNU General Public License v3.0 UpdatedApr 28, 2025 -
strainFlye Public
Pipeline for analyzing rare mutations in metagenome-assembled genomes
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qurro-feedstock Public
Forked from conda-forge/qurro-feedstockA conda-smithy repository for qurro.
BSD 3-Clause "New" or "Revised" License UpdatedMar 30, 2025 -
qurro Public
Forked from biocore/qurroVisualize differentially ranked features (taxa, metabolites, ...) in tandem with log-ratios of their sample abundances
JavaScript BSD 3-Clause "New" or "Revised" License UpdatedMar 13, 2025 -
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minimap2 Public
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
C Other UpdatedMay 18, 2024 -
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sheepgut Public
Scripts, notebooks, figures, and other files used in our analyses for the strainFlye manuscript
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hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedAug 17, 2022 -
Flye Public
Forked from mikolmogorov/FlyeDe novo assembler for single molecule sequencing reads using repeat graphs
C Other UpdatedJun 30, 2022 -
biom-format Public
Forked from biocore/biom-formatThe Biological Observation Matrix (BIOM) Format Project
Python Other UpdatedApr 20, 2022 -
improved-octo-waddle Public
Forked from biocore/improved-octo-waddleBalanced parentheses succinct data structure in Python
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 20, 2022 -
EukRep Public
Forked from patrickwest/EukRepClassification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
Python MIT License UpdatedAug 10, 2021 -
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emperor Public
Forked from biocore/emperorEmperor a tool for the analysis and visualization of large microbial ecology datasets
JavaScript Other UpdatedMar 5, 2021 -
empress-analyses Public
Forked from knightlab-analyses/empress-analysesJupyter Notebook BSD 2-Clause "Simplified" License UpdatedFeb 26, 2021 -
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q2view Public
Forked from qiime2/q2view-oldA web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
JavaScript BSD 3-Clause "New" or "Revised" License UpdatedNov 9, 2020
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