fix counting#108
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vyepez88
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Aug 11, 2025
vyepez88
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Aug 12, 2025
| # invert the strand information for reverse strand specific protocols | ||
| # (only needed for single-end reads as real strand is already set for | ||
| # paired-end reads in the readGAlignmentPairs function) | ||
| if(isFALSE(pairedEnd) && strandMode == 2L){ |
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are you sure we do not need this invertStrand anymore
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The invert would only be interesting for SE data that is stranded. For PE readGAlignmentPairs takes care of this.
vyepez88
approved these changes
Aug 13, 2025
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