Structural variation and indel detection by local assembly

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Tools for analyzing 10X Genomics data

Genome-wide reconstruction of complex structural variants

A flexible framework for nucleosome profiling of cell-free DNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Scripts for analyses in the Griffin manuscript

A flexible framework for nucleosome profiling of cell-free DNA

KRONOS workflow for TITAN pipeline

Tools for 1D and 2D genomic significance analysis

Directions and upload scripts for connecting LIMS to Firehose (CTC QC and analysis)