Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Scripts for analyses in the Griffin manuscript

A flexible framework for nucleosome profiling of cell-free DNA

A flexible framework for nucleosome profiling of cell-free DNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Structural variation and indel detection by local assembly

Tools for analyzing 10X Genomics data

Tools for 1D and 2D genomic significance analysis

Genome-wide reconstruction of complex structural variants

KRONOS workflow for TITAN pipeline

Directions and upload scripts for connecting LIMS to Firehose (CTC QC and analysis)