Tags: geoschem/GCHP

HEMCO update: Merge PR #368 (Fixes in Regrid_A2A_Mod)

This commit informs the GCHP superproject about the following
commits that were pushed to the GitHub geoschem/HEMCO repository:

3bd29b0 (HEAD -> dev/3.13.0, origin/dev/3.13.0) Merge PR #368 (Various fixes to Regrid_A2A_Mod)

PR #368 fixes several regridding bugs (see github/HEMCO #367).  This
improves the regridding of regional inventories with missing values
and with polar averaging (in ymap_r8r8).

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>

GEOS-Chem update: Merge PR #3367 (Fix phCloud and isCloud)

This commit informs the GCHP superproject about the following
commits that were pushed to the GitHub geoschem/geos-chem repository:

2510f4d94 Merge PR #3367 (Fixed phCloud and isCloud)

PR #3367 supersedes the original PR #3328. The original PR was based
off of 14.7.1, but we have merged this on top of 14.8.0-alpha.15 in
order to avoid a compilation error (due to an update to the HETP
module made for the multiphase sulfate update that will go into 14.8.0).

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>

Updates mapl3 test files and directories to include one child test

Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>

GEOS-Chem update: Merge PR #3366 (Exclude KPP passive spc)

This commit informs the GCHP superproject about the following
commits that were pushed to the GitHub geoschem/geos-chem repository:

47d7e77ee Merge PR #3366 (Prevent passive spc from affecting Rosenbrock solver)

In PR #3366 we have done the following:

1. Rebuilt fullchem, Hg, carbon mechanisms with KPP 3.5.0.

2. Require KPP 3.5.0 as the minimum version.

3. Fixed an issue in Headers/species_database_mod.F90 where the
   KPP_AbsTol and KPP_RelTol YAML tags were not being read in
   and stored in State_Chm%KPP_AbsTol and State_Chm%KPP_RelTol.

4. Pass a threshold of 1.0e25 to the KPP "Initialize" routine
   that will tell KPP to interpret species having ATOL > 1.0e25
   as being "passive species" and to exclude them from the
   Rosenbrock error norm.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>

Update submodules for compatibility with latest MAPL develop branch

Submodule update for GEOS-Chem to successfully run

Update submodules for compatibility with latest MAPL develop branch

Merge PR #563 (Request 96 vcpus for GCHP benchmark runs)

This merge brings PR #563 (Request 96 vcpus for AWS instance
used for GCHP benchmark runs, by @lizziel) into the GCHP 14.8.0
development stream.

PR #563 changes the number of vcpus required for the AWS instance
used for GCHP benchmark runs. This updates is so that GCHP and
GC-Classic use the same number of cores. This enables an
apples-to-apples timing comparison. Previously, in 14.7.0, GCHP used
30 cores while GC-Classic used 62.

Note that request of 96 vcpus does not mean 96 cores will be used for
the GCHP benchmark runs. We are limiting the GCHP benchmark runs to
physical cores (less than equal to number of vcpus) only because
performance is degraded when using multi-threading on AWS. The number
of physical cores in an AWS instance is often half of the number of
vcpus. See the gc-cloud-infrastructure repository for where the actual
number of cores used for GCHP runs is set. In 14.8.0 we will use 48
physical cores for GCHP.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>

GEOS-Chem update: Merge PR #3358 (Fix e90_n/s, nh_5/50 tracers)

This commit informs the GCHP superproject about the following
commits that were pushed to the GitHub geoschem/geos-chem repository:

fd22a954f Merge PR #3358 (Fix e90_n/s and nh_5/50 tracers)

PR #3358 fixes several issues that caused e90_n, e90_s, nh_5 and nh_50
tracers to be incorrectly set due to errors in tracer_mod.F90
and species_database.yml.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>

Submodule updates for fvdycore as FV3 submod and gchp no child rundir

Submodule src/GCHP_GridComp/FVdycoreCubed_GridComp 3df2548..d2524a0:
  > Change version of fvdycore to the mapl3 dev branch
  > Add back fvdycore as a submodule

Submodule src/GCHP_GridComp/GEOSChem_GridComp/geos-chem a4889f0..6190601:
  > Add run directory option for GCHP without children using MAPL3

Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>