tmux source code

A professional cross-platform SSH/Sftp/Shell/Telnet/Tmux/Serial terminal.

Share your terminal over the web

MMseqs2: ultra fast and sensitive search and clustering suite

bedtools - the swiss army knife for genome arithmetic

De novo assembler for single molecule sequencing reads using repeat graphs

Advanced and Fast Data Transformation in R

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Align proteins to genomes with splicing and frameshift

Fast and accurate de novo assembler for long reads

🔬 BEDOPS: high-performance genomic feature operations

lumpy: a general probabilistic framework for structural variant discovery

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Inference of ploidy and heterozygosity structure using whole genome sequencing data

haplotypic duplication identification tool

Program for aligning DNA sequences, a pairwise aligner.

Fast and accurately polish the genome generated by long reads.

Pairwise whole genome aligner

software tools for haplotype assembly from sequence data

Tandem Repeats Finder: a program to analyze DNA sequences

Constructing a pangenome gene graph

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Detecting sites of genomic enrichment

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Yet another Hi-C scaffolding tool

A (mostly) universal methylation extractor for BS-seq experiments.

An ultra-fast and efficient genomic tool for coverage calculation

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Git repository for FASTA36 sequence comparison software