Stars
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
An Engine-Agnostic Deep Learning Framework in Java
The goal of this project is to allow integrated or USB-connected webcams to be accessed directly from Java. Using provided libraries users are able to read camera images and detect motion. Main pro…
QuPath - Open-source bioimage analysis for research
Fast computer vision library for SFM, calibration, fiducials, tracking, image processing, and more.
Public domain software for processing and analyzing scientific images
JTransforms is the first, open source, multithreaded FFT library written in pure Java.
A generic next-generation Java library for image processing
Distributed Temporal Graph Analytics with Apache Flink
TrackMate is your buddy for your everyday tracking.
A suite of classification clustering algorithm implementations for Java. A number of partitional, hierarchical and density-based algorithms including DBSCAN, k-Means, k-Medoids, MeanShift, Affinity…
Fiji library to perform image segmentation based on the Weka learning schemes
Free Analysis and Interactive Reconstruction for Structured Illumination Microscopy
The ImageJ plugin to run deep-learning models
A plugin framework and application container with built-in extensibility mechanism 🔌
ImageJ Ops: "Write once, run anywhere" image processing
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Lecture scripts and slides I use during the Software Engineering course at TU Dresden
Fiji module for image transformation and related algorithms
Create 3D/4D animations using a natural language-based syntax
ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
ImgLib2-based viewer for registered SPIM stacks and more