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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 818 161

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 179 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 333 59

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 183 38

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 687 112

Repositories

Showing 10 of 386 repositories
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 2 Updated Feb 12, 2026
  • avillachlab-jenkins Public
    hms-dbmi/avillachlab-jenkins’s past year of commit activity
    HCL 5 Apache-2.0 6 0 0 Updated Feb 12, 2026
  • biodata_catalyst_stigmatizing_variables Public
    hms-dbmi/biodata_catalyst_stigmatizing_variables’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Feb 12, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Feb 12, 2026
  • chromoscope Public

    Interactive multiscale visualization for structural variation in human genomes

    hms-dbmi/chromoscope’s past year of commit activity
    TypeScript 71 MIT 7 37 4 Updated Feb 12, 2026
  • pic-sure-auth-microapp Public
    hms-dbmi/pic-sure-auth-microapp’s past year of commit activity
    Java 4 Apache-2.0 6 0 2 Updated Feb 12, 2026
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 7 0 3 Updated Feb 12, 2026
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 1 0 6 Updated Feb 12, 2026
  • pic-sure-all-in-one Public
    hms-dbmi/pic-sure-all-in-one’s past year of commit activity
    Shell 4 Apache-2.0 12 0 1 Updated Feb 12, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure’s past year of commit activity
    Java 6 Apache-2.0 3 0 3 Updated Feb 12, 2026
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