an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.

Next-gen, Pusher-compatible, open-source WebSockets server. Simple, fast, and resilient. 📣

Fast alignment and preprocessing of chromatin profiles

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

Applying polygenic scores (PGS) on imputed genotypes

A fast 23andMe DNA parser and inferrer for Python

Python bindings to bwa mem

Structural variant toolkit for VCFs

Parallel Block GZIP

A fast bloom filter implemented by Rust for Python! 10x faster than pybloom!

Command line scientific data management tool

Structural variant benchmark using PacBio HiFi reads

get things from one computer to another, safely

vcfdist: Accurately benchmarking phased variant calls

Optimised tools for group-indexing operations: aggregated sum and more

Tool for globally phasing diploid assembly graphs with orthogonal data

Run your GitHub Actions locally 🚀

genes and genomes at your fingertips

Simulation tool for ChIP- and other -seq experiments

A fast seed-embed-extend based sequence mapper and aligner

Efficient variant-call data storage and retrieval library using the TileDB storage library.

A fast approximate aligner for long DNA sequences

A fast, scalable, and accurate local ancestry method.

Aligns short reads using dynamic seed size with strobemers

Traversal over Python's objects subtree and calculate the total size of the subtree in bytes (deep size).

Sphinx extension for bibtex style references.

a HDF5-based python pickle replacement

A Github action for running a Snakemake workflow