Stars
An open-source AI agent that brings the power of Gemini directly into your terminal.
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
[EMNLP 2025 Demo] PDF scientific paper translation with preserved formats - 基于 AI 完整保留排版的 PDF 文档全文双语翻译，支持 Google/DeepL/Ollama/OpenAI 等服务，提供 CLI/GUI/MCP/Docker/Zotero
Reference implementation for DPO (Direct Preference Optimization)
Generative modeling of molecular dynamics trajectories
Turn a Github Repo's contents into a big prompt for long-context models like Claude 3 Opus.
The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑🔬
Performs validation, transformation, and in-silico digestion of text files containing protein or peptide sequences (FASTA format or delimited text)
Mixed continous/categorical flow-matching model for de novo molecule generation.
Public RFDiffusionAA repo
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
Bayesian optimization in PyTorch
The code of a graph neural network (GNN) for molecules, which is based on learning representations of r-radius subgraphs (i.e., fingerprints) in molecules.
diffusion model for protein sequence generation
Generation of protein sequences and evolutionary alignments via discrete diffusion models
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Implementation of Denoising Diffusion Probabilistic Model in Pytorch