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1. puffin puffin Public

   deep learning-inspired explainable sequence model for transcription initiation

   Python 106 10

2. ddsm ddsm Public

   Dirichlet Diffusion Score Model for Biological Sequence Generation.

   Jupyter Notebook 65 11

3. orca orca Public

   sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

   Python 102 24

4. TriFlow TriFlow Public

   TriFlow: Deep Learning model for structure conditioned sequence design

   Python 9

5. InverseFlow InverseFlow Public

   Official repo for inverse flow and consistency models.

   Jupyter Notebook 6 1

6. Orca-Fly Orca-Fly Public

   Orca-Fly: Deep learning models trained on Pico-C data in Drosophila embryogenesis.

   Jupyter Notebook 1