Add spatial transcriptomics tools to Single-cell section - #18
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KalinNonchev wants to merge 1 commit into
Open
Add spatial transcriptomics tools to Single-cell section#18KalinNonchev wants to merge 1 commit into
KalinNonchev wants to merge 1 commit into
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The Single-cell section has no spatial transcriptomics coverage yet, so this adds a
Spatial transcriptomicssub-topic alongside the existingDNA-seqandATAC-seqbullets, with three tools that predict or analyse spatially resolved expression.DeepSpot-M (medRxiv) and DeepSpot (medRxiv) predict spatial expression from H&E histology at transcriptome-wide and spot/single-cell resolution respectively; AESTETIK (Bioinformatics 2026) learns multi-modal spot representations for spatial domain identification.
All three are pip-installable and use only GitHub links, so the lychee link check should stay green. Happy to reshuffle the placement if you would rather they sit elsewhere.
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