user documentation for MetaCentrum

Repository for MetaCentrum hands-on courses

Software for predicting library complexity and genome coverage in high-throughput sequencing.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

Scripts to download genomes from the NCBI FTP servers

Toolkit for processing sequences in FASTA/Q formats

A comparison of different Oxford Nanopore basecallers

📖 A collection of pure bash alternatives to external processes.

Useful bash one-liners for bioinformatics.

MITObim - mitochondrial baiting and iterative mapping

🍻 Default formulae for the missing package manager for macOS (or Linux)

🍺 The missing package manager for macOS (or Linux)