A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://protflow.readthedocs.io/en/latest/

Computational Reverse Engineering Analysis of Scattering Experiments Method for Interpretation of 2D Small-Angle Scattering Profiles (CREASE-2D)

Tutorials, Notebooks and Slides for the EMBO Practical Course: Latin American AI4PD workshop 2025 | Puerto Varas, Chile

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Code for our paper "Protein sequence design with a learned potential"

trRosetta for protein design

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

IgSimulator is a versatile tool for simulation of immunoglobulin repertoire

Python library for generating Autoprotocol

Introduction to Chemical Engineering Analysis

KeePass plugin to expose password entries securely (256bit AES/CBC) over HTTP

Demos of many Rosetta applications

Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.

Official git repository for Biopython (originally converted from CVS)