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OMIA

Temporary space for the OMIA breed ontology, as we develop the ontology. This is a work in progress

Intstructions for creation of OWL file using ROBOT template

Updated 20201-02-01

  1. In the Excel spreadsheet, create new column prepended NCBIT species ID with NCBIT prefix
  2. for the species name, use with a preferred label on the NCBITaxon class
  3. Prepend OMIA breed ID with OMIA prefix
  4. Make columns M & N unique
  5. LBO id - delete all values that don't start with LBO (sort and delete 'null')
  6. Do the same for VeNom. Note - deleted ? and null
  7. do the same for FCI ID
  8. add lbo_id, venom_code, fci_id to respective columns
  9. make a new directory in my local files- omia-breeds.tsv and omia-species.tsv (create a new repo in nicolevasilevsky/omia)
  10. create two patterns for these:
  • omia-breeds.yaml
  • omia-species.yaml

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