A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

Source for "The computational guide to Fiber-seq"

Visualizing transcript structure and annotation using ggplot2

An implementation of the Interactive Brokers API for Rust

A nimble options backtesting library for Python

Open-source Rust framework for building event-driven live-trading & backtesting systems

Download market data from Yahoo! Finance's API

Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis

Integrative Transcriptomics Viewer

Predictive kmer models for development use

A talking LLM that runs on your own computer without needing the internet.

direct RNA nanopore sequencing barcode design and demultiplexing

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Rust implementation of Needleman-Wunsch & Smith-Waterman sequence alignment

Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

Simulator of an ONT device with ReadUntil gRPC support

Python wrapping multithreaded bindings to minimap2

CLI tool for flexible and fast adaptive sampling on ONT sequencers

A minimap2 implementation with binseq inputs

Like pigz, but rust

Single-cell epigenomics analysis tools

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Rust bindings to minimap2 library

Python quantitative trading strategies including VIX Calculator, Pattern Recognition, Commodity Trading Advisor, Monte Carlo, Options Straddle, Shooting Star, London Breakout, Heikin-Ashi, Pair Tra…

A generative world for general-purpose robotics & embodied AI learning.

GEEES: Inferring Cell-specific Gene-Enhancer Interactions from Multi-modal Single Cell Data