Commits

History for

Commits on Jul 6, 2026

alpar for web version updated to 1.3.12
AlperYurtseven
committed
f22dc50

Commits on Jul 1, 2026

prediction submodule bugs solved
AlperYurtseven
committed
39e260b
error fixed in prediction pipeline, version updated to 1.3.10
AlperYurtseven
committed
1016df8
alpar added to alpar.yaml
AlperYurtseven
committed
f45f147

Commits on Jun 16, 2026

datasail error causing failure when it is called with antibiotic and stratification fixed, version updated
AlperYurtseven
committed
ba015b1

Commits on May 11, 2026

fixed issues version updated
AlperYurtseven
committed
128b024

Commits on May 8, 2026

qc not tested strains are causing phenotype table creation error fixed, version updated to 1.3.5

AlperYurtseven
and
Copilot
committed
d1e0fdd

Commits on May 7, 2026

cd hit env name fixed
AlperYurtseven
committed
619a15f
prokka database creator environment error fixed
AlperYurtseven
committed
2ec1e3e

Commits on May 6, 2026

fixed issues, working copy of v1.3.1
Alper
committed
fe2b309
full automatic pipeline fixed
Alper
committed
4f0f967

Commits on Feb 20, 2026

binary table creation is more optimized, binary table thresholding is also optimized, memory usage for 10000 strains dropped from 900gb to 90gb
AlperYurtseven
committed
09659ce

Commits on Dec 25, 2025

meta yaml updated to v1.1.2
AlperYurtseven
committed
205f564

Commits on Nov 24, 2025

version updated to 1.1.1
AlperYurtseven
committed
0ef3243

Commits on Jun 13, 2025

python version changed from 3.9 -> 3.13
AlperYurtseven
committed
94df3fb

Commits on Jan 27, 2025

version 1.0.4 introduced
AlperYurtseven
committed
2447d73

Commits on Jan 20, 2025

Version 1.0.0 is introduced:
AlperYurtseven
committed
003911b
version is updated to 0.9.0
AlperYurtseven
committed
7361c9e

Commits on Dec 20, 2024

version 0.8.0 introduced
AlperYurtseven
committed
48a5e7d

Commits on Nov 6, 2024

version updated to 0.7.2
AlperYurtseven
committed
6395775

Commits on Oct 17, 2024

version updated to 0.6.2, panaroo & cdhit input bug fixed for prediction module
AlperYurtseven
committed
ef07474

Commits on Sep 12, 2024

equalizing columns bug solved
AlperYurtseven
committed
f93e091

Commits on Aug 22, 2024

gene presence absence with cd-hit added
AlperYurtseven
committed
7824967

Commits on Jul 24, 2024

No datasail option added to automatix pipeline, version updated to 0.5.1
AlperYurtseven
committed
c940ad6

Commits on Jul 2, 2024

pandas dataframe read functions has been changed to manual csv reader for speed (100x faster)
AlperYurtseven
committed
5711815

Commits on May 15, 2024

0.4.2 version introduced, multithreading option added to gwas, ml_algorithm selection added to automatix pipeline, now user can specify which ml they want (combinations possible)
AlperYurtseven
committed
b4b447c

Commits on May 6, 2024

tool renamed to alpar, description changed, gwas bug fixed
AlperYurtseven
committed
ee067b3

Commits on Apr 26, 2024

readme updated
AlperYurtseven
committed
574bd23

Commits on Apr 19, 2024

minor bug fixes
AlperYurtseven
committed
23cee48

Commits on Apr 17, 2024

test are added, meta.yaml corrected
AlperYurtseven
committed
b370c1d

Commits on Apr 16, 2024

name changed from scripts -> sr-amr
AlperYurtseven
committed
1409742
python version corrected
AlperYurtseven
committed
8408f7c
python version corrected
AlperYurtseven
committed
6c76e7d
python version corrected
AlperYurtseven
committed
ddfedcf
python version corrected
AlperYurtseven
committed
ca4d665