ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

A fast quickheap implementation

MetagenomeWatch

An efficient CLI to extract sequences from the SRA

Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.

Scripts, information and data for publication in APPS.

👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.

A generalist Python node editor

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

Whole Genome Alignment Tools

A mathematically characterized hypothesis test for organism presence/absence in a metagenome

Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.

fast, multithreaded sourmash operations: search, compare, and gather.

Searching large collections of sequencing data with genome-scale queries

Building the compacted de Bruijn graph efficiently from references or reads.

A Rust library for building modular, fast and compact indexes over genomic data

Just another minhash implementation.

PtrHash minimal perfect hash function

Command line scientific data management tool

Wake On Lan over the internet without port forwarding

Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.

A repo to track the progress of Python on WebAssembly (WASM)

A conda-smithy repository for sourmash-minimal.

A fast and memory-limited landmask based on GSHHG and OpenStreetMap for determing whether a point on Earth is on land or in the ocean.

Benchmarking pairwise aligners

Coming soon

Rust wrapper for the next generation (still currently in C++)