Public Release of ProGen3 family of Models

List of papers about Proteins Design using Deep Learning

PINDER: The Protein INteraction Dataset and Evaluation Resource

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

A collection of resources and papers on Diffusion Models

Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

AlphaFold-initiated replica exchange protein docking

FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

PyTorch Lightning + Hydra. A very user-friendly template for ML experimentation. ⚡🔥⚡