spherical genome embeddings for diverse representative selection

Graphical interactive tool for the visualization of sequence graphs in GFA format.

Transform your favorite cities into beautiful, minimalist designs. MapToPoster lets you create and export visually striking map posters with code.

Zero-copy PDF text extraction library written in Zig. High-performance, memory-mapped parsing with SIMD acceleration.

A user-friendly tool for quality control and interactive analysis of microbiome data

This package streamlines model selection and averaging of PerMANOVA using AICc and information-theoretic principles. Based on the approach by Burnham and Anderson, it provides a workflow for compar…

GCUA - General Codon Usage Analysis (v2)

Official home of genome aligner based upon notion of Cactus graphs

the pangenome graph builder

SitemapGenerator is a framework-agnostic XML Sitemap generator written in Ruby with automatic Rails integration. It supports Video, News, Image, Mobile, PageMap and Alternate Links sitemap extensio…

🔥 Rankify: A Comprehensive Python Toolkit for Retrieval, Re-Ranking, and Retrieval-Augmented Generation 🔥. Our toolkit integrates 40 pre-retrieved benchmark datasets and supports 7+ retrieval techn…

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

SIB course on bayesian statistics with applications using Rstan

Codon Usage Analysis and Prediction of Gene Expressivity

Snakemake Pipeline to check the requirements for a prokaryotic assembly to be included in the SeqCode initiative

Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes

FastAAI version 2

Advanced Database Search for Long Sequences

Analysis of SMA outfit (blackbox) use in public equity markets for real-time insight into wealth distribution and direct stock market influence. A call for transparency and public discourse.

Preparation pipeline for ROCkOut

Repository with scripts to normalize relative abundance (TAD/GEQ, RPKM or recruited reads) at a given nonpareil coverage

Gene cluster comparison figure generator

Cluster munitions for microbial genomic sequence data

Improved long-read assembly by preserving contained reads

Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis

MGnify genome analysis pipeline

A nomenclatural ontology for names (not concepts).

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

Scientific Inkscape: Inkscape extensions for figure resizing and editing