Stars
BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
A suite of boosting algorithms for the online learning setting.
Various algorithms for analysing genomics data
A JAX research toolkit for building, editing, and visualizing neural networks.
A read extraction and realignment tool for next generation sequencing data
Program for the analysis and visualization of whole-slide images in digital pathology
Quantifying copy number signatures from absolute copy number profiles
Encoder-Decoder Cell and Nuclei segmentation models
Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.
RWKV (pronounced RwaKuv) is an RNN with great LLM performance, which can also be directly trained like a GPT transformer (parallelizable). We are at RWKV-7 "Goose". So it's combining the best of RN…
Train to 94% on CIFAR-10 in <6.3 seconds on a single A100. Or ~95.79% in ~110 seconds (or less!)
Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch
Powerful, open-source AI tools for digital pathology.
Diffusion Models in Medical Imaging (Published in Medical Image Analysis Journal)
Make sankey, alluvial and sankey bump plots in ggplot
Check strandedness of RNA-Seq fastq files
RNA-seq workflow using STAR and DESeq2
A collection of bash scripts and configuration files to Ubuntu flavours of Linux.
This repository contains implementations of the paper, Bayesian Model-Agnostic Meta-Learning.
Implementation of a nearly optimal Stopping rule QUICK-STOP for randomized tests
A curated list of projects related to the reMarkable tablet