TreeSheets : Free Form Data Organizer (see strlen.com/treesheets)

Knee or elbow detection for curves

Knee point detection in Python 📈

Linux/OSX/FreeBSD resource monitor

Jupyter widget to interactively view molecular structures and trajectories

A high-fidelity E. coli RNA-seq compendium

The Fish Shell Framework

The user-friendly command line shell.

A cross-platform, OpenGL terminal emulator.

Graph theory (network) library for visualisation and analysis

Hacker Tools class website

View flow data as Sankey diagrams

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Python and C++ code for reading and writing genomics data.

Python library to handle Gene Ontology (GO) terms

Collect metadata for sequencing experiments

Custom Jupyter Notebook Themes

breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq …