Internet search engine for text-oriented websites. Indexing the small, old and weird web.

Randomly subsample sequencing reads or alignments

Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

FASTQ sequence quality visualisation with Emoji

Generate random names (adj-noun) like docker and github.

Random name generator in Python

Memray is a memory profiler for Python

Libre calorie counter app for Android. Built with Cordova.

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

MGnify API toolkit

This repo collects the list of learning online resources related to microbiome computational science and tools.

Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.

TwitRSS.me: Tool to make Twittter timelines and searches into RSS feeds

Bash Automated Testing System

An opinionated list of Python frameworks, libraries, tools, and resources

R shiny app for interactive microbiome analysis

API Documentation for Python Projects

Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

📰 RSS/Atom feed reader

Interactive Data Visualization in the browser, from Python

A high-performance, Pythonic language for bioinformatics

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

Code examples of fast and simple k-mer counters for tutorial purposes

Conda recipes for the bioconda channel.

Master the command line, in one page

With Holoviews, your data visualizes itself.

Extremely simple yet powerful header-only C++ plotting library built on the popular matplotlib

Reprocible analyses accompanying the paper introducing the decontam method