The Composer of ggplots

Tools to make an R developer's life easier

Statistical Rethinking Course for Jan-Mar 2023

Make Complex Heatmaps

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Fast, sensitive and accurate integration of single-cell data with Harmony

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

Palettes for R based on the Scientific Colour-Maps

A package to help convert different single-cell data formats to each other

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

R package for integrating and analyzing multiple single-cell datasets

R toolkit for the analysis of single-cell chromatin data

Spatial omics analysis toolbox

Analysis Pipeline for Single Cell ATAC-seq

Methods for detecting doublets in single-cell sequencing data

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

Effect size measures and significance tests

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.

R interface to the ANTs biomedical image processing library

Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

Latent Embedding Multivariate Regression

Multi-sample Unified Discriminant ANalysis

Medical image analysis framework merging ANTsR and deep learning

Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings

Calculate distances between phylogenetic trees in R