Dynamic Documents for R

A general-purpose tool for dynamic report generation in R

Rmd source files for the HarvardX series PH525x

Create Blogs and Websites with R Markdown

An R 📦 to make testing 😀

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

Template R package with rust bindings

Quick mining and visualization of NGS data by integrating genomic databases

🎯 ChIP peak Annotation, Comparison and Visualization

A collection of scripts and notes related to genomics and bioinformatics

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

deconstructSigs

Avoid the typical working directory pain when using 'knitr'

FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

Create mutation signatures from MAF's, and decompose them into Stratton signatures

Shiny app for building charts with a point-and-click interface

Filters for false-positive mutation calls in NGS

A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).

This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.

R-based genomics workflow management

Scripts for downstream analysis plotting of pipeline output

An R/BioC package implementing a statistical and computational framework for the identification of RNA-protein interaction sites in PAR-CLIP data.

R package - Collection of functions used on a day-to-day basis, such as those pertaining to report generation.

Awesome people who write awesome R scripts

DNAm Age calculation using DNA methylation data.

A parser from MEME XML output to R

clean some datasets

❗ This is a read-only mirror of the CRAN R package repository. beanplot — Visualization via Beanplots (Like Boxplot/Stripchart/Violin Plot)