Stars
A repository with the tutorials using the GXwasR software.
GXwasR: A tool for conducting sex-aware quality control, association analysis, and testing various models of sex-dependent genetic effects in complex traits
FLAMES: Accurate gene prioritization in GWAS loci
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
Implementation of mcBERT, our method for patient-level single-cell transcriptomics data representation
HistoQC is an open-source quality control tool for digital pathology slides
An open-source digital pathology based rapid image annotation tool
Pathology Foundation Model - Nature Medicine
Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.
Cell2Sentence: Teaching Large Language Models the Language of Biology
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
The ValidSense toolbox aims to assess the agreement between two quantitative methods or devices measuring the same quantity using the Limits of Agreement analysis (LoA analysis), also known as the …
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation
A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
This is a web portal to facilitate privacy preserving and secure genomics analysis with multiple parties.
Collection of analysis tools for quantitative trait loci