The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.

Compile Cargo project with zig as linker

C library for high-throughput sequencing data formats

Review-first terminal diff viewer for agentic coders

Experimental Linux microvm setup with a TypeScript Control Plane as Agent Sandbox

Rust bioinformatics crate aimed at Microbial genomics

mdb is an MPI-aware debugger, which supports multiple backends e.g., gdb, lldb, rocgdb, rust-gdb etc.

The API to search, scrape, and interact with the web at scale. 🔥

🖍️ Convert anything to markdown. Mark it.

AI agent toolkit: unified LLM API, agent loop, TUI, coding agent CLI

Tools for publishing transcripts for Claude Code sessions

Bash for Agents

Create executable documents that demonstrate an agent's work

Tools (written in C using htslib) for manipulating next-generation sequencing data

WebAssembly modules for genomics

Embeddable genomic visualization component based on the Integrative Genomics Viewer

A minimal, secure Python interpreter written in Rust for use by AI

Universal markup converter

Empowering everyone to build reliable and efficient software.

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Rust-powered BAM depth extraction with Python bindings

Command-line JSON processor

A bunch of lints to catch common mistakes and improve your Rust code. Book: https://doc.rust-lang.org/clippy/

A cat(1) clone with wings.

Make sankey, alluvial and sankey bump plots in ggplot

convert PAF format to CHAIN format