[Julia Package] Fitting Phase-Type Distributions using an EM Algorithm

Paper describing estimation of incidence and transmission for COVID

A workspace for Pluto notebooks — built for humans and agents, together.

Modeling Hub for Bundibugyo Ebola

How to serial interval? — slides for the Lorentz Center workshop connecting survival analysis and infectious disease modelling (Leiden, 16 June 2026)

A few extra distributions used in survival analysis

Julia package for simulating from and fitting multistate models, especially semi-Markov models, to panel data.

Workshop website for 'Connecting Survival Analysis and Infectious Disease Modeling', Lorentz Center, 15–19 June 2026, Leiden

Dynamic tree structure with control over the accessibility of node children

AstroNvim is an aesthetic and feature-rich neovim config that is extensible and easy to use with a great set of plugins

Coalescent Odds

Self-hosted AI workspace.

Git powered terminal-based todo/note manager -- markdown note page per task. Single binary!

Easy peasy logging to TensorBoard with Julia

Julia package for automated Bayesian inference on a factor graph with reactive message passing

Infectious disease models in Python

adaptive 1d numerical Gauss–Kronrod integration in Julia

Read and write documentation inventory files such as the objects.inv file generated by Documenter and Sphinx

Lazy code loading for Julia

A new language server for Julia, enabling modern, compiler-powered tooling.

A grand model of infectiousness combining different measures of viral load.

What the Package Does (Title Case)

Data and scripts for epidemiological analysis of the 2026 Bundibugyo Ebola outbreak

Analysis of profiling data using trees

Joint Bayesian generative Turing model for the 2026 DRC BVD outbreak. Combines exports, deaths and reported suspected cases (with ascertainment) in a single posterior. Includes a no-onward-transmis…